AUTHORS.txt
LICENSE.txt
MANIFEST.in
README.rst
TODO.txt
WHATS_NEW.txt
setup.cfg
setup.py
PyDSTool/Events.py
PyDSTool/FuncSpec.py
PyDSTool/Interval.py
PyDSTool/Model.py
PyDSTool/ModelContext.py
PyDSTool/ModelSpec.py
PyDSTool/ModelTools.py
PyDSTool/Points.py
PyDSTool/Symbolic.py
PyDSTool/Trajectory.py
PyDSTool/Variable.py
PyDSTool/__init__.py
PyDSTool/common.py
PyDSTool/conf.py
PyDSTool/errors.py
PyDSTool/integrator.py
PyDSTool/matplotlib_import.py
PyDSTool/parseUtils.py
PyDSTool/utils.py
PyDSTool.egg-info/PKG-INFO
PyDSTool.egg-info/SOURCES.txt
PyDSTool.egg-info/dependency_links.txt
PyDSTool.egg-info/pbr.json
PyDSTool.egg-info/requires.txt
PyDSTool.egg-info/top_level.txt
PyDSTool/Generator/ADMC_ODEsystem.py
PyDSTool/Generator/DDEsystem.py
PyDSTool/Generator/Dopri_ODEsystem.py
PyDSTool/Generator/EmbeddedSysGen.py
PyDSTool/Generator/Euler_ODEsystem.py
PyDSTool/Generator/ExplicitFnGen.py
PyDSTool/Generator/ExtrapolateTable.py
PyDSTool/Generator/ImplicitFnGen.py
PyDSTool/Generator/InterpolateTable.py
PyDSTool/Generator/LookupTable.py
PyDSTool/Generator/MapSystem.py
PyDSTool/Generator/ODEsystem.py
PyDSTool/Generator/Radau_ODEsystem.py
PyDSTool/Generator/Vode_ODEsystem.py
PyDSTool/Generator/__init__.py
PyDSTool/Generator/allimports.py
PyDSTool/Generator/baseclasses.py
PyDSTool/Generator/messagecodes.py
PyDSTool/Generator/mixins.py
PyDSTool/PyCont/BifPoint.py
PyDSTool/PyCont/ContClass.py
PyDSTool/PyCont/Continuation.py
PyDSTool/PyCont/Makefile
PyDSTool/PyCont/Plotting.py
PyDSTool/PyCont/TestFunc.py
PyDSTool/PyCont/__init__.py
PyDSTool/PyCont/biblio_for_examples.txt
PyDSTool/PyCont/misc.py
PyDSTool/PyCont/auto/cmds/auto.env.csh
PyDSTool/PyCont/auto/cmds/auto.env.sh
PyDSTool/PyCont/auto/demos/ab/Makefile
PyDSTool/PyCont/auto/demos/ab/ab.c
PyDSTool/PyCont/auto/demos/lor/Makefile
PyDSTool/PyCont/auto/demos/lor/lor.c
PyDSTool/PyCont/auto/demos/lor/lor.c.dev
PyDSTool/PyCont/auto/demos/lor/lor.dat
PyDSTool/PyCont/auto/dev/cflow.out
PyDSTool/PyCont/auto/module/Makefile
PyDSTool/PyCont/auto/module/automod.c
PyDSTool/PyCont/auto/module/automod.i
PyDSTool/PyCont/auto/module/interface.c
PyDSTool/PyCont/auto/module/include/Makefile
PyDSTool/PyCont/auto/module/include/automod.h
PyDSTool/PyCont/auto/module/include/autovfield.h
PyDSTool/PyCont/auto/module/include/interface.h
PyDSTool/PyCont/auto/src/Makefile
PyDSTool/PyCont/auto/src/README
PyDSTool/PyCont/auto/src/autlab.c
PyDSTool/PyCont/auto/src/autlib1.c
PyDSTool/PyCont/auto/src/autlib2.c
PyDSTool/PyCont/auto/src/autlib3.c
PyDSTool/PyCont/auto/src/autlib4.c
PyDSTool/PyCont/auto/src/autlib5.c
PyDSTool/PyCont/auto/src/auto.c
PyDSTool/PyCont/auto/src/conpar.c
PyDSTool/PyCont/auto/src/dgesvd.c
PyDSTool/PyCont/auto/src/dmatrix.c
PyDSTool/PyCont/auto/src/eispack.c
PyDSTool/PyCont/auto/src/fcon.c
PyDSTool/PyCont/auto/src/reduce.c
PyDSTool/PyCont/auto/src/setubv.c
PyDSTool/PyCont/auto/src/include/Makefile
PyDSTool/PyCont/auto/src/include/auto.h
PyDSTool/PyCont/auto/src/include/auto_c.h
PyDSTool/PyCont/auto/src/include/auto_f2c.h
PyDSTool/PyCont/auto/src/include/auto_mpi.h
PyDSTool/PyCont/auto/src/include/auto_types.h
PyDSTool/PyCont/auto/src/include/numpy.i
PyDSTool/PyCont/auto/src/libf2c/Makefile
PyDSTool/PyCont/auto/src/libf2c/cabs.c
PyDSTool/PyCont/auto/src/libf2c/d_imag.c
PyDSTool/PyCont/auto/src/libf2c/d_lg10.c
PyDSTool/PyCont/auto/src/libf2c/d_sign.c
PyDSTool/PyCont/auto/src/libf2c/i_dnnt.c
PyDSTool/PyCont/auto/src/libf2c/i_nint.c
PyDSTool/PyCont/auto/src/libf2c/pow_dd.c
PyDSTool/PyCont/auto/src/libf2c/pow_di.c
PyDSTool/PyCont/auto/src/libf2c/pow_ii.c
PyDSTool/PyCont/auto/src/libf2c/r_lg10.c
PyDSTool/PyCont/auto/src/libf2c/z_abs.c
PyDSTool/PyCont/auto/src/libf2c/z_exp.c
PyDSTool/PyCont/auto/src/libf2c/z_log.c
PyDSTool/Toolbox/ActivationFuncs.py
PyDSTool/Toolbox/DSSRT_tools.py
PyDSTool/Toolbox/FR.py
PyDSTool/Toolbox/FSM.py
PyDSTool/Toolbox/InputProfile.py
PyDSTool/Toolbox/ModelEst.py
PyDSTool/Toolbox/ModelHelper.py
PyDSTool/Toolbox/NineML.py
PyDSTool/Toolbox/PRCtools.py
PyDSTool/Toolbox/ParamEst.py
PyDSTool/Toolbox/PySCes_SBML.py
PyDSTool/Toolbox/__init__.py
PyDSTool/Toolbox/adjointPRC.py
PyDSTool/Toolbox/data_analysis.py
PyDSTool/Toolbox/dssrt.py
PyDSTool/Toolbox/event_driven_simulator.py
PyDSTool/Toolbox/fracdim.py
PyDSTool/Toolbox/makeSloppyModel.py
PyDSTool/Toolbox/mechmatlib.py
PyDSTool/Toolbox/model_primitives.py
PyDSTool/Toolbox/neuralcomp.py
PyDSTool/Toolbox/neuro_data.py
PyDSTool/Toolbox/phaseplane.py
PyDSTool/Toolbox/prep_boxplot.py
PyDSTool/Toolbox/synthetic_data.py
PyDSTool/Toolbox/test_protocols.py
PyDSTool/Toolbox/optimizers/__init__.py
PyDSTool/Toolbox/optimizers/defaults.py
PyDSTool/Toolbox/optimizers/criterion/__init__.py
PyDSTool/Toolbox/optimizers/criterion/composite_criteria.py
PyDSTool/Toolbox/optimizers/criterion/criteria.py
PyDSTool/Toolbox/optimizers/criterion/facilities.py
PyDSTool/Toolbox/optimizers/criterion/information_criteria.py
PyDSTool/Toolbox/optimizers/helpers/__init__.py
PyDSTool/Toolbox/optimizers/helpers/finite_difference.py
PyDSTool/Toolbox/optimizers/helpers/levenberg_marquardt.py
PyDSTool/Toolbox/optimizers/helpers/quadratic.py
PyDSTool/Toolbox/optimizers/line_search/__init__.py
PyDSTool/Toolbox/optimizers/line_search/adaptive_last_step_modifier.py
PyDSTool/Toolbox/optimizers/line_search/backtracking_search.py
PyDSTool/Toolbox/optimizers/line_search/barzilai_borwein_non_monotone_search.py
PyDSTool/Toolbox/optimizers/line_search/barzilai_borwein_search.py
PyDSTool/Toolbox/optimizers/line_search/cubic_interpolation.py
PyDSTool/Toolbox/optimizers/line_search/damped_line_search.py
PyDSTool/Toolbox/optimizers/line_search/fibonacci_section.py
PyDSTool/Toolbox/optimizers/line_search/fixed_last_step_modifier.py
PyDSTool/Toolbox/optimizers/line_search/golden_section.py
PyDSTool/Toolbox/optimizers/line_search/goldstein_rule.py
PyDSTool/Toolbox/optimizers/line_search/hyperbolic_line_search.py
PyDSTool/Toolbox/optimizers/line_search/quadratic_interpolation.py
PyDSTool/Toolbox/optimizers/line_search/scaled_line_search.py
PyDSTool/Toolbox/optimizers/line_search/simple_line_search.py
PyDSTool/Toolbox/optimizers/line_search/strong_wolfe_powell_rule.py
PyDSTool/Toolbox/optimizers/line_search/wolfe_powell_rule.py
PyDSTool/Toolbox/optimizers/optimizer/__init__.py
PyDSTool/Toolbox/optimizers/optimizer/optimizer.py
PyDSTool/Toolbox/optimizers/optimizer/standard_optimizer.py
PyDSTool/Toolbox/optimizers/optimizer/standard_optimizer_modifying.py
PyDSTool/Toolbox/optimizers/step/__init__.py
PyDSTool/Toolbox/optimizers/step/conjugate_gradient_step.py
PyDSTool/Toolbox/optimizers/step/goldfeld_step.py
PyDSTool/Toolbox/optimizers/step/goldstein_price_step.py
PyDSTool/Toolbox/optimizers/step/gradient_step.py
PyDSTool/Toolbox/optimizers/step/local_brute_force_1dstep.py
PyDSTool/Toolbox/optimizers/step/marquardt_step.py
PyDSTool/Toolbox/optimizers/step/newton_step.py
PyDSTool/Toolbox/optimizers/step/partial_step.py
PyDSTool/Toolbox/optimizers/step/quasi_newton_step.py
PyDSTool/Toolbox/optimizers/step/restart_conjugate_gradient.py
PyDSTool/core/__init__.py
PyDSTool/core/context_managers.py
PyDSTool/core/codegenerators/__init__.py
PyDSTool/core/codegenerators/base.py
PyDSTool/core/codegenerators/c.py
PyDSTool/core/codegenerators/matlab.py
PyDSTool/core/codegenerators/python.py
PyDSTool/integrator/dc_lapack.f
PyDSTool/integrator/dop853.c
PyDSTool/integrator/dop853.h
PyDSTool/integrator/dop853.i
PyDSTool/integrator/dop853mod.c
PyDSTool/integrator/dop853mod.h
PyDSTool/integrator/eventFinding.c
PyDSTool/integrator/eventFinding.h
PyDSTool/integrator/events.h
PyDSTool/integrator/integration.c
PyDSTool/integrator/integration.h
PyDSTool/integrator/interface.c
PyDSTool/integrator/interface.h
PyDSTool/integrator/lapack.f
PyDSTool/integrator/lapackc.f
PyDSTool/integrator/maxmin.c
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PyDSTool/integrator/memory.c
PyDSTool/integrator/memory.h
PyDSTool/integrator/radau5.f
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PyDSTool/integrator/radau5.i
PyDSTool/integrator/radau5mod.c
PyDSTool/integrator/radau5mod.h
PyDSTool/integrator/radau5v.f
PyDSTool/integrator/signum.c
PyDSTool/integrator/signum.h
PyDSTool/integrator/vfield.h
examples/CIN.py
examples/DAE_example.py
examples/Dopri_backwards_test.py
examples/HH_DSSRTtest.py
examples/HH_adjointPRC.py
examples/HH_loaded.py
examples/HH_loaded_Cintegrator.py
examples/HH_model.py
examples/HH_model_Cintegrator.py
examples/HH_model_Cintegrator_testbounds.py
examples/HH_model_testbounds.py
examples/IF_delaynet.py
examples/IF_delaynet_syn.py
examples/IF_model_test.py
examples/IF_squarespike_model.py
examples/ML_adjointPRC.py
examples/Makefile
examples/ModelSpec_test.py
examples/MultiCompartments.py
examples/MultiCompartments2.py
examples/NineMLCatalog_test.py
examples/NineML_Izh_FS.xml
examples/NineML_import_test.py
examples/PyCont_ABCReaction.py
examples/PyCont_ABReaction.py
examples/PyCont_Brusselator.py
examples/PyCont_Catalytic.py
examples/PyCont_Catalytic_demo.py
examples/PyCont_DiscPredPrey.py
examples/PyCont_Hamiltonian.py
examples/PyCont_HindmarshRose.py
examples/PyCont_Hopfield.py
examples/PyCont_LPNeuron.py
examples/PyCont_LevelCurve.py
examples/PyCont_Logistic.py
examples/PyCont_Lorenz.py
examples/PyCont_MorrisLecar_TypeI.py
examples/PyCont_MorrisLecar_TypeII.py
examples/PyCont_NewLorenz.py
examples/PyCont_PredPrey.py
examples/PyCont_SaddleNode.py
examples/PyCont_hybrid_osc.py
examples/PyCont_vanDerPol.py
examples/PySCes_import_test.py
examples/SLIP_2D.py
examples/SLIP_2D_maps.py
examples/SLIP_2D_pdc.py
examples/SLIP_plot.py
examples/Tutorial_Calcium.py
examples/Tutorial_LorenzMap.py
examples/Tutorial_PredatorPrey.py
examples/Tutorial_SymbolicJac.py
examples/Tutorial_VdP.py
examples/Tutorial_compneuro.py
examples/Tutorial_linear.py
examples/Tutorial_saddle_manifolds.py
examples/embedded_map_test.py
examples/fingermodel_auxvartest.py
examples/fingermodel_vode.py
examples/forced_spring.py
examples/freefinger_noforce_radau.py
examples/imprecise_event_test.py
examples/interp_dopri_test.py
examples/interp_piecewise_test.py
examples/interp_vode_test.py
examples/joe_pest.py
examples/matplotlibrc
examples/neuro_coupled_example.py
examples/objectdelete_test.py
examples/parvals.dat
examples/pest_test1.py
examples/pest_test2.py
examples/pest_test3.py
examples/pest_test3_Cintegrator.py
examples/pest_test4_Cintegrator.py
examples/phaseplane_HHtest.py
examples/poly_interp_test.py
examples/run_all_tests.py
examples/sloppycell_example.py
examples/splinetest.py
examples/symbolic_args_test.py
examples/test_hybrid_extinputs.py
examples/test_hybrid_extinputs_Cintegrator.py
examples/test_variable_traj.py
examples/traj_gt0_test.py
examples/ttraj_prebotfast.dat
examples/vode_withJac_test.py
examples/xtraj_prebotfast
examples/xtraj_prebotfast.dat
examples/build/temp.freebsd-12.0-ALPHA1-amd64-2.7/liblapack_lite.a
examples/build/temp.freebsd-12.0-ALPHA1-amd64-2.7/libradau5.a
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tests/test_interval.py
tests/test_numeric_diff.py
tests/test_parseutils.py
tests/test_point.py
tests/test_pointinfo.py
tests/test_pointsets.py
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tests/test_symbolic_diff.py
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tests/generator/test_lookuptable.py
tests/generator/test_macros.py
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tests/toolbox/test_adjointPRC.py
tests/toolbox/test_context_spikes.py
tests/toolbox/test_data_analysis.py
tests/toolbox/test_dssrt.py
tests/toolbox/test_dssrt_tools.py
tests/toolbox/test_event_driven_simulator.py
tests/toolbox/test_fr.py
tests/toolbox/test_fracdim.py
tests/toolbox/test_fsm.py
tests/toolbox/test_modelhelper.py
tests/toolbox/test_neuralcomp.py
tests/toolbox/test_phaseplane.py
tests/toolbox/test_prctools.py
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tests/toolbox/optimizers/test_powell.py
tests/toolbox/optimizers/test_quadratic.py
tests/toolbox/optimizers/test_rosenbrock.py
tests/toolbox/optimizers/criterion/test_composite_criteria.py
tests/toolbox/optimizers/criterion/test_criteria.py
tests/toolbox/optimizers/criterion/test_facilities.py
tests/toolbox/optimizers/criterion/test_information_criteria.py
tests/toolbox/optimizers/helpers/test_finite_difference.py
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tests/toolbox/optimizers/helpers/test_quadratic.py
tests/toolbox/optimizers/line_search/test_adaptive_last_step_modifier.py
tests/toolbox/optimizers/line_search/test_backtracking_search.py
tests/toolbox/optimizers/line_search/test_cubic_interpolation.py
tests/toolbox/optimizers/line_search/test_damped_line_search.py
tests/toolbox/optimizers/line_search/test_fibonacci_section.py
tests/toolbox/optimizers/line_search/test_fixed_last_step_modifier.py
tests/toolbox/optimizers/line_search/test_golden_section.py
tests/toolbox/optimizers/line_search/test_goldstein_rule.py
tests/toolbox/optimizers/line_search/test_quadratic_interpolation.py
tests/toolbox/optimizers/line_search/test_simple_line_search.py
tests/toolbox/optimizers/line_search/test_strong_wolfe_powell_rule.py
tests/toolbox/optimizers/line_search/test_wolfe_powell_rule.py
tests/toolbox/optimizers/step/test_conjugate_gradient_step.py
tests/toolbox/optimizers/step/test_goldstein_price_step.py
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